All Publications
See our most up to date list of publications on google scholar.
2025
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities.
Bioinformatics (Oxford, England)
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02 Aug 2025
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pubmed:40794845
Microbiome Single Cell Atlases Generated with a Commercial Instrument.
Advanced science (Weinheim, Baden-Wurttemberg, Germany)
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03 Jun 2025
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pubmed:40462354
Nighttime Pistachio Consumption Alters Stool Microbiota Diversity and Taxa Abundance Compared with Education to Consume 1-2 Carbohydrate Exchanges (15-30 grams) over 12 Weeks in Adults with Prediabetes: A Secondary Analysis from a Randomized Crossover Trial.
Current developments in nutrition
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27 May 2025
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pubmed:40612050
A designed synthetic microbiota provides insight to community function in Clostridioides difficile resistance.
Cell host & microbe
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03 Mar 2025
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pubmed:40037353
Black Raspberry Modulates Cecal and Oral Microbiomes at the Early Stage of a Dibenzo[def,p]chrysene-Induced Murine Oral Cancer Model.
Cancer prevention research (Philadelphia, Pa.)
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06 Jan 2025
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pubmed:39502024
2024
Coordinated variation in the immune systems and microbiomes of healthy humans is linked to tonic interferon states.
bioRxiv : the preprint server for biology
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03 Dec 2024
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pubmed:39677657
The Potential of Cannabichromene (CBC) as a Therapeutic Agent.
The Journal of pharmacology and experimental therapeutics
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18 Oct 2024
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pubmed:38777605
Multiple mycotoxin exposure assessment through human biomonitoring in an esophageal cancer case-control study in the Arsi-Bale districts of Oromia region of Ethiopia.
International journal of hygiene and environmental health
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21 Sep 2024
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pubmed:39306897
High Cannabigerol Hemp Extract Moderates Colitis and Modulates the Microbiome in an Inflammatory Bowel Disease Model.
The Journal of pharmacology and experimental therapeutics
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19 Aug 2024
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pubmed:39009468
Effects of Early Life Exposures to the Aryl Hydrocarbon Receptor Ligand TCDF on Gut Microbiota and Host Metabolic Homeostasis in C57BL/6J Mice.
Environmental health perspectives
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14 Aug 2024
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pubmed:39140734
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities.
bioRxiv : the preprint server for biology
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09 Aug 2024
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pubmed:39149354
Human gut Actinobacteria boost drug absorption by secreting P-glycoprotein ATPase inhibitors.
iScience
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27 May 2024
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pubmed:38947502
Gut bacteria convert glucocorticoids into progestins in the presence of hydrogen gas.
Cell
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24 May 2024
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pubmed:38795705
Microbiome single cell atlases generated with a commercial instrument.
bioRxiv : the preprint server for biology
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16 Mar 2024
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pubmed:37609281
Bile salt hydrolase catalyses formation of amine-conjugated bile acids.
Nature
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07 Feb 2024
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pubmed:38326609
2023
Mild SARS-CoV-2 infection results in long-lasting microbiota instability.
mBio
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09 Jun 2023
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pubmed:37294090
Systems biology elucidates the distinctive metabolic niche filled by the human gut microbe Eggerthella lenta.
PLoS biology
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19 May 2023
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pubmed:37205710
Roles of the gut microbiome in weight management.
Nature reviews. Microbiology
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03 May 2023
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pubmed:37138047
Challenges and opportunities of strain diversity in gut microbiome research.
Frontiers in microbiology
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17 Feb 2023
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pubmed:36876113
Meta-organismal metabolism in cardiovascular disease.
Cell host & microbe
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11 Jan 2023
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pubmed:36634617
2022
Mild SARS-CoV-2 infection results in long-lasting microbiota instability.
bioRxiv : the preprint server for biology
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08 Dec 2022
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pubmed:36523400
Making gut microbiomes from scratch.
Cell host & microbe
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09 Nov 2022
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pubmed:36356566
Bile acids and the gut microbiota: metabolic interactions and impacts on disease.
Nature reviews. Microbiology
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17 Oct 2022
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pubmed:36253479
Effects of caloric restriction on the gut microbiome are linked with immune senescence.
Microbiome
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04 Apr 2022
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pubmed:35379337
Human gut bacteria produce Τ
Nature
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16 Mar 2022
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pubmed:35296854
2021
Reporting guidelines for human microbiome research: the STORMS checklist.
Nature medicine
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17 Nov 2021
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pubmed:34789871
Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome.
Cell reports
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02 Nov 2021
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pubmed:34731631
The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health.
eLife
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07 Oct 2021
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pubmed:34617511
Caloric restriction disrupts the microbiota and colonization resistance.
Nature
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23 Jun 2021
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pubmed:34163067
2020
A thermogenic fat-epithelium cell axis regulates intestinal disease tolerance.
Proceedings of the National Academy of Sciences of the United States of America
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30 Nov 2020
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pubmed:33257580
Gut microbiota-specific IgA
Science immunology
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20 Nov 2020
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pubmed:33219152
Erratum: Set1/COMPASS repels heterochromatin invasion at euchromatic sites by disrupting Suv39/Clr4 activity and nucleosome stability.
Genes & development
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01 Aug 2020
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pubmed:32747479
A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria.
Cell host & microbe
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28 Apr 2020
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pubmed:32348781
A widely distributed metalloenzyme class enables gut microbial metabolism of host- and diet-derived catechols.
eLife
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18 Feb 2020
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pubmed:32067637
2019
Set1/COMPASS repels heterochromatin invasion at euchromatic sites by disrupting Suv39/Clr4 activity and nucleosome stability.
Genes & development
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05 Dec 2019
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pubmed:31805521
Genetic basis for the cooperative bioactivation of plant lignans by Eggerthella lenta and other human gut bacteria.
Nature microbiology
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04 Nov 2019
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pubmed:31686027
Cooking shapes the structure and function of the gut microbiome.
Nature microbiology
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30 Sep 2019
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pubmed:31570867
CRISPR-Cas System of a Prevalent Human Gut Bacterium Reveals Hyper-targeting against Phages in a Human Virome Catalog.
Cell host & microbe
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03 Sep 2019
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pubmed:31492655
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Nature biotechnology
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01 Sep 2019
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pubmed:31399723
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Nature biotechnology
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01 Aug 2019
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pubmed:31341288
Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet.
Cell host & microbe
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16 Jul 2019
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pubmed:31324413
Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism.
Science (New York, N.Y.)
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14 Jun 2019
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pubmed:31196984
Nutrient Sensing in CD11c Cells Alters the Gut Microbiota to Regulate Food Intake and Body Mass.
Cell metabolism
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23 May 2019
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pubmed:31130466
2018
Immobilization of cadmium and lead by
Gut microbes
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14 Nov 2018
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pubmed:30426826
How to Determine the Role of the Microbiome in Drug Disposition.
Drug metabolism and disposition: the biological fate of chemicals
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15 Aug 2018
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pubmed:30111623
Discovery and characterization of a prevalent human gut bacterial enzyme sufficient for the inactivation of a family of plant toxins.
eLife
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15 May 2018
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pubmed:29761785
2017
Evaluation of sampling and storage procedures on preserving the community structure of stool microbiota: A simple at-home toilet-paper collection method.
Journal of microbiological methods
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16 Nov 2017
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pubmed:29155236
Long-term irritable bowel syndrome symptom control with reintroduction of selected FODMAPs.
World journal of gastroenterology
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07 Jul 2017
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pubmed:28740352
2016
The oral microbiome of patients with axial spondyloarthritis compared to healthy individuals.
PeerJ
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09 Jun 2016
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pubmed:27330858
2015
A multi-platform metabolomics approach identifies highly specific biomarkers of bacterial diversity in the vagina of pregnant and non-pregnant women.
Scientific reports
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21 Sep 2015
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pubmed:26387596
Probiotic lactobacilli: a potential prophylactic treatment for reducing pesticide absorption in humans and wildlife.
Beneficial microbes
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30 Jun 2015
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pubmed:26123785
Microbiota at Multiple Body Sites during Pregnancy in a Rural Tanzanian Population and Effects of Moringa-Supplemented Probiotic Yogurt.
Applied and environmental microbiology
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15 May 2015
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pubmed:25979893
2014
2013
The rationale for probiotics improving reproductive health and pregnancy outcome.
American journal of reproductive immunology (New York, N.Y. : 1989)
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18 Feb 2013
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pubmed:23414386
2011
Vaginal microbiome and epithelial gene array in post-menopausal women with moderate to severe dryness.
PloS one
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02 Nov 2011
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pubmed:22073175
Unraveling how probiotic yogurt works.
Science translational medicine
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26 Oct 2011
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pubmed:22030747
2010
Probiotic strategies for the treatment and prevention of bacterial vaginosis.
Expert opinion on pharmacotherapy
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01 Dec 2010
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pubmed:21080853